Author Affiliations
Abstract
1 School of Physics and Information Technology Shaanxi Normal University Xi’an 710119, P. R. China
2 School of Information Sciences and Technology Northwest University Xi’an 710069, P. R. China
Bioluminescence tomography (BLT) is a promising imaging modality that can provide noninvasive three-dimensional visualization information on tumor distribution. In BLT reconstruction, the widely used methods based on regularization or greedy strategy face problems such as over-sparsity, over-smoothing, spatial discontinuity, poor robustness, and poor multi-target resolution. To deal with these problems, combining the advantages of the greedy strategies as well as regularization methods, we propose a hybrid reconstruction framework for model-based multispectral BLT using the support set of a greedy strategy as a feasible region and the Alpha-divergence to combine the weighted solutions obtained by L1-norm and L2-norm regularization methods. In numerical simulations with digital mouse and in vivo experiments, the results show that the proposed framework has better localization accuracy, spatial resolution, and multi-target resolution.Bioluminescence tomography (BLT) is a promising imaging modality that can provide noninvasive three-dimensional visualization information on tumor distribution. In BLT reconstruction, the widely used methods based on regularization or greedy strategy face problems such as over-sparsity, over-smoothing, spatial discontinuity, poor robustness, and poor multi-target resolution. To deal with these problems, combining the advantages of the greedy strategies as well as regularization methods, we propose a hybrid reconstruction framework for model-based multispectral BLT using the support set of a greedy strategy as a feasible region and the Alpha-divergence to combine the weighted solutions obtained by L1-norm and L2-norm regularization methods. In numerical simulations with digital mouse and in vivo experiments, the results show that the proposed framework has better localization accuracy, spatial resolution, and multi-target resolution.
Bioluminescence tomography Alpha-divergence greedy strategy inverse problem 
Journal of Innovative Optical Health Sciences
2023, 16(1): 2245003
刘艳秋 1,2胡先功 2,3张衡 1,2郭红波 1,2贺小伟 1,2,3,*
作者单位
摘要
1 西北大学 信息科学与技术学院,陕西西安7027
2 西北大学 西安市影像组学与智能感知重点实验室,陕西西安71017
3 西北大学 网络和数据中心,陕西西安710127
生物发光断层成像(Bioluminescence Tomography, BLT)是一种很有前途的在体分子成像工具,可以在细胞和分子水平上对生理和病理过程进行无创监测。BLT的重建精度受光传输模型误差和逆问题病态性影响,针对此问题,受高阶光传输模型可提高模型精度、多光谱方法可降低逆问题病态性的启发,本文将光谱差分理论和多光谱方法结合构建的光谱差分策略分别应用到基于扩散近似方程(Diffusion approximation Equation, DE)和三阶简化球谐近似方程(3rd Simplified spherical harmonic approximation equation, SP3)建立的光传输模型。首先,对这两种辐射传输方程(Radiative Transfer Equation, RTE)近似产生的误差进行分析,对比了光谱差分策略对两种光传输模型误差的衰减作用。前向仿真实验结果表明光谱差分策略能有效地减少DE和SP3的模型误差,对DE模型采用光谱差分,能够获得接近SP3模型的传输精度,并且降低高阶近似对运算时间和存储空间的高要求。在此基础上,将光谱差分策略分别应用到DE和SP3光传输模型进行光源重建。实验结果表明光谱差分策略在提高两种光传输模型精度的同时,缓解了BLT中逆问题的病态性,使光源重建的位置误差小于1 mm,在目标定位、形状恢复和图像对比度等方面取得了更准确的效果。相比于SP3模型平均耗时约1 525 s,DE模型结合光谱差分策略平均耗时仅为34 s左右,较好地兼顾了重建精度和重建速率。
生物发光断层成像 光谱差分 光传输模型 光源重建 bioluminescence tomography spectral differential optical transmission model source reconstruction 
光学 精密工程
2022, 30(18): 2167
Author Affiliations
Abstract
1 Northwest University School of Information Sciences and Technology Xi'an, P. R. China 710069
2 Shaanxi Normal University School of Physics and Information Technology Xi'an, P. R. China 710062
Fluorescence molecular tomography (FMT) allows the detection and quantification of various biological processes in small animals in vivo, which expands the horizons of pre-clinical research and drug development. Efficient three-dimensional (3D) reconstruction algorithm is the key to accurate localization and quantification of fluorescent target in FMT. In this paper, 3D reconstruction of FMT is regarded as a sparse signal recovery problem and the compressive sampling matching pursuit (CoSaMP) algorithm is adopted to obtain greedy recovery of fluorescent signals. Moreover, to reduce the modeling error, the simplified spherical harmonics approximation to the radiative transfer equation (RTE), more specifically SP3, is utilized to describe light propagation in biological tissues. The performance of the proposed reconstruction method is thoroughly evaluated by simulations on a 3D digital mouse model by comparing it with three representative greedy methods including orthogonal matching pursuit (OMP), stagewise OMP (StOMP), and regularized OMP (ROMP). The CoSaMP combined with SP3 shows an improvement in reconstruction accuracy and exhibits distinct advantages over the comparative algorithms in multiple targets resolving. Stability analysis suggests that CoSaMP is robust to noise and performs stably with reduction of measurements. The feasibility and reconstruction accuracy of the proposed method are further validated by phantom experimental data.
Tomography image reconstruction techniques medical and biological imaging inverse problems 
Journal of Innovative Optical Health Sciences
2016, 9(6): 1650024
作者单位
摘要
西北大学 信息科学与技术学院, 陕西 西安 710127
作为辐射传输方程的高阶近似, 简化球谐近似模型成为近年光学分子成像研究的重点, 但计算效率低限制了它的广泛应用, 为此提出一种基于图形处理器的并行加速策略, 采用NVIDIA 公司推出的统一计算设备架构,对求解过程中耗时最多的两个模块——有限元刚度矩阵的生成和线性方程组的求解进行基于图形处理器的并行加速; 根据统一计算设备架构的特点, 进行计算任务的分配、存储器的合理使用以及数据的预处理三方面的优化; 仿体及数字鼠仿真实验对比刚度矩阵生成时间以及平均迭代时间, 以评价所提出方法的加速效果。实验结果表明, 该方法可使求解速度提高30倍左右, 展示了该方法在光学分子成像中的优势及潜力。
简化球谐近似模型 有限元法 统一计算设备架构 并行计算 simplify spherical harmonic approximation model finite element method compute unified device architecture parallel computing 
红外与激光工程
2016, 45(6): 0624002
作者单位
摘要
1 西北大学信息科学与技术学院, 陕西 西安 710069
2 陕西师范大学物理与信息技术学院, 陕西 西安 710062
为降低荧光分子断层成像(FMT)重建的病态性,受压缩感知理论启发,提出一种结合自适应可行区域迭代收缩策略和分段正交匹配追踪算法的重建方法。通过选取高荧光产额节点所在区域,迭代缩小可行区域,使目标函数有一个全局最优解。数字鼠模型上单目标及双目标重建结果表明,贪婪算法结合区域收缩策略不仅可以显著提高荧光目标的定位精度和荧光产额的定量分布,还可以降低算法对参数选取的依赖。物理仿体实验进一步验证了该方法在实际FMT 应用中的可行性和稳定性。
生物光学 荧光分子断层成像 可行区域迭代收缩 分段正交匹配追踪 
激光与光电子学进展
2016, 53(1): 011701
作者单位
摘要
西北大学信息科学与技术学院, 陕西 西安 710069
为提高荧光分子断层成像(FMT)的重建精度,将非凸LP (0 < P < 1) 正则化引入到FMT 重建中。为有效求解包含非凸惩罚项的优化问题,结合加权同伦算法(WHA)提出了快速迭代重建算法,将LP 正则化问题转化为一系列加权的L1 正则化问题求解。异质仿体上的仿真实验表明,LP (0医用光学 非凸正则化 加权同伦算法 荧光分子断层成像 重建算法 
光学学报
2015, 35(7): 0717001
Author Affiliations
Abstract
1 School of Information Sciences and Technology Northwest University, Xi'an, 710069, P. R. China
2 School of Physics and Information Technology Shaanxi Normal University, Xi'an, 710062, P. R. China
Recently, the simplified spherical harmonics equations (SPN) model has attracted much attention in modeling the light propagation in small tissue geometries at visible and near-infrared wavelengths. In this paper, we report an efficient numerical method for fluorescence molecular tomography (FMT) that combines the advantage of SPN model and adaptive hp finite element method (hp-FEM). For purposes of comparison, hp-FEM and h-FEM are, respectively applied to the reconstruction process with diffusion approximation and SPN model. Simulation experiments on a 3D digital mouse atlas and physical experiments on a phantom are designed to evaluate the reconstruction methods in terms of the location and the reconstructed fluorescent yield. The experimental results demonstrate that hp-FEM with SPN model, yield more accurate results than h-FEM with diffusion approximation model does. The phantom experiments show the potential and feasibility of the proposed approach in FMT applications.
Fluorescence molecular tomography simplified spherical harmonics equations reconstruction adaptive finite element method 
Journal of Innovative Optical Health Sciences
2014, 7(2): 1350057
作者单位
摘要
西北大学信息科学与技术学院, 陕西 西安 710127
生物发光断层成像(BLT)是一种非常有效的光学分子成像方式,在医学预临床研究中的有着广泛的研究。然而,BLT的核心问题即光源重建仍然存在着巨大的挑战:光在生物组织中的传输模型是否精确与重建问题不适定性都使得光源位置与密度的重建变得十分困难。为了准确高效地实现光源重建,在光传输模型的选择上,通过将扩散近似模型和高阶简化球谐近似模型(SPN)的结果与蒙特卡罗金标准进行比较,结果表明阶次(N)为3时的SP3模型描述光子在生物体的传输时能够最佳地兼顾精度和速度。基于SP3传输模型,结合光源在生物体内稀疏分布的特征,采用变量分离近似稀疏重构(SpaRSA)的方法来解决BLT的重建问题。为了验证提出方法的有效性,通过将数字鼠仿真和真实小鼠实验与典型的l1_ls方法对比表明在SP3模型下SpaRSA算法可行。
生物光学 生物发光断层成像 变量分离近似稀疏重构 简化球谐近似 辐射传输方程 
光学学报
2014, 34(6): 0617001
作者单位
摘要
1 中国科学院长春光学精密机械与物理研究所应用光学国家重点实验室, 吉林 长春 130033
2 中国科学院研究生院, 北京 100039
3 吉林大学电子科学与工程学院集成光电子国家重点联合实验室, 吉林 长春 130023
设计了一种基于多模干涉(MMI)耦合输入/输出结构的跑道型双微环串联谐振滤波器, 并采用紫外光敏聚合物材料SU-8作波导芯层, 聚合物CYTOP为下包层, 在硅基底上完成了器件的制备。器件的波导端面尺寸为2 μm×1 μm, 与设计值相符, 扫描电镜显示所制备的器件波导侧壁陡直度较高。直波导传输损耗的测试结果表明, 在1550 nm波长, 直波导传输损耗约为2.0 dB/cm。测试并获得了多模干涉结构和器件的通光及输出光谱图。测试结果表明, MMI结构在较宽的波长范围内实现了接近50∶50的功分比, 微环谐振滤波器的通光性能良好, 实现了滤波功能, 器件的自由光谱区FSR实际值约为0.94 nm, 与设计参数值很接近。研究结果表明采用聚合物SU-8制备小波导尺寸微环谐振器的器件简便可行。
集成光学 微环谐振滤波器 紫外光刻 
中国激光
2009, 36(1): 134

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